STRINGSTRING
ENSCING00000003836 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000003836" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000003836Uncharacterized protein (438 aa)    
Predicted Functional Partners:
ENSCING00000006015
Uncharacterized protein (461 aa)
     
 
  0.951
prpf19
Uncharacterized protein (437 aa)
       
 
  0.933
cdc40
Uncharacterized protein (504 aa)
     
 
  0.931
sf3b3
Uncharacterized protein (1216 aa)
       
 
  0.882
ENSCING00000020031
Uncharacterized protein (118 aa)
       
 
  0.878
ENSCING00000009048
Uncharacterized protein (802 aa)
     
 
  0.846
U1C
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (122 aa)
     
 
  0.841
ENSCING00000024695
Zinc finger protein Ci-ZF(C3H/U1like)-1 (162 aa)
       
 
  0.841
ENSCING00000002170
Uncharacterized protein (609 aa)
     
 
  0.838
ENSCING00000014326
Uncharacterized protein (437 aa)
     
 
  0.830
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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