STRINGSTRING
ENSCING00000003830 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000003830" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000003830Uncharacterized protein ; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’- phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs (504 aa)    
Predicted Functional Partners:
ENSCING00000005384
Uncharacterized protein (160 aa)
 
  0.821
LOC494405
Uncharacterized protein LOC494405 (406 aa)
     
  0.813
ENSCING00000001176
Uncharacterized protein (740 aa)
     
  0.811
ENSCING00000013271
Uncharacterized protein (247 aa)
     
  0.755
ENSCING00000007875
Uncharacterized protein (364 aa)
   
   
  0.614
ENSCING00000012436
Uncharacterized protein (435 aa)
           
  0.589
ENSCING00000006381
Uncharacterized protein (407 aa)
           
  0.589
ENSCING00000001529
Uncharacterized protein (324 aa)
     
      0.562
ENSCING00000019565
Uncharacterized protein (376 aa)
   
   
  0.538
ENSCING00000000382
Uncharacterized protein (499 aa)
           
  0.508
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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