STRINGSTRING
ck2b protein (Ciona intestinalis) - STRING interaction network
"ck2b" - Protein kinase Ck2-beta in Ciona intestinalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
ck2bProtein kinase Ck2-beta ; Plays a complex role in regulating the basal catalytic activity of the alpha subunit (215 aa)    
Predicted Functional Partners:
ck2a
Casein kinase 2 alpha subunit (385 aa)
     
  0.998
ssrp1
FACT complex subunit SSRP1 ; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (603 aa)
     
  0.972
supt16h
Uncharacterized protein (1035 aa)
     
  0.965
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
       
 
  0.928
dsh
Dishevelled homolog (685 aa)
         
    0.892
ENSCING00000003237
Uncharacterized protein (323 aa)
     
      0.849
ENSCING00000023500
Uncharacterized protein (753 aa)
     
 
  0.822
ENSCING00000017987
Uncharacterized protein (532 aa)
     
      0.734
ENSCING00000021708
Uncharacterized protein (188 aa)
       
      0.733
ENSCING00000008994
Uncharacterized protein (1034 aa)
       
      0.733
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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