STRINGSTRING
pdedelta protein (Ciona intestinalis) - STRING interaction network
"pdedelta" - cGMP phosphodiesterase delta subunit in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdedeltacGMP phosphodiesterase delta subunit (153 aa)    
Predicted Functional Partners:
ENSCING00000016182
Uncharacterized protein (182 aa)
     
  0.934
ENSCING00000008227
Uncharacterized protein (1760 aa)
         
  0.904
ENSCING00000007249
Uncharacterized protein (947 aa)
         
  0.902
ENSCING00000008538
Uncharacterized protein (608 aa)
         
  0.901
ENSCING00000002214
Uncharacterized protein (518 aa)
         
  0.901
ENSCING00000000490
Uncharacterized protein (1086 aa)
         
  0.900
rut
Adenylate cyclase; Uncharacterized protein (439 aa)
         
  0.900
ENSCING00000018906
Uncharacterized protein (185 aa)
     
 
    0.900
ENSCING00000019643
Uncharacterized protein (166 aa)
         
    0.900
Cin.27519
Uncharacterized protein (422 aa)
         
    0.900
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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