STRINGSTRING
otp protein (Ciona intestinalis) - STRING interaction network
"otp" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otpTranscription factor protein (492 aa)    
Predicted Functional Partners:
ENSCING00000014405
Uncharacterized protein (346 aa)
       
 
  0.770
LOC778715
Transcription factor protein (1039 aa)
     
  0.759
srf
Transcription factor protein (335 aa)
       
  0.699
foxn2/3
Transcription factor protein (748 aa)
       
  0.668
foxL
FoxL protein (387 aa)
       
  0.667
foxm
Transcription factor protein (916 aa)
       
  0.665
foxk
Transcription factor protein (614 aa)
       
  0.664
lhx3
LIM/homeobox protein Lhx3a type 1 (596 aa)
     
 
  0.647
foxg
Uncharacterized protein (470 aa)
       
  0.647
foxc
Transcription factor protein (510 aa)
       
  0.614
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (6%) [HD]