STRINGSTRING
swi/snf protein (Ciona intestinalis) - STRING interaction network
"swi/snf" - SWI/SNF protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swi/snfSWI/SNF protein (1003 aa)    
Predicted Functional Partners:
zf(phd)-2
Uncharacterized protein (818 aa)
     
  0.984
cbf-2
Transcription factor CBF/NF-Y/archaeal histone -2 (156 aa)
     
  0.975
rbbp4
Uncharacterized protein (431 aa)
     
  0.960
smarcc2
Uncharacterized protein (639 aa)
     
  0.957
ENSCING00000004824
Uncharacterized protein (456 aa)
     
  0.947
polr3b
DNA-directed RNA polymerase (275 aa)
     
  0.917
ENSCING00000009943
Uncharacterized protein (832 aa)
     
  0.906
ENSCING00000005116
Uncharacterized protein (445 aa)
     
  0.906
ENSCING00000003423
Uncharacterized protein (758 aa)
     
  0.906
ENSCING00000010029
Histone H2A (141 aa)
       
  0.902
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (7%) [HD]