STRINGSTRING
nelfb protein (Ciona intestinalis) - STRING interaction network
"nelfb" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nelfbUncharacterized protein (605 aa)    
Predicted Functional Partners:
ENSCING00000001124
Uncharacterized protein (575 aa)
     
  0.938
ENSCING00000005779
Uncharacterized protein (308 aa)
     
  0.918
ENSCING00000005154
Uncharacterized protein (537 aa)
     
  0.897
ncbp1
Uncharacterized protein (795 aa)
     
  0.864
spt4
SPT4 protein ; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II (122 aa)
         
  0.795
supt5h
Uncharacterized protein (1047 aa)
     
  0.774
ssrp1
FACT complex subunit SSRP1 ; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (603 aa)
     
 
    0.644
ENSCING00000008994
Uncharacterized protein (1034 aa)
     
 
    0.624
ENSCING00000008984
Uncharacterized protein (822 aa)
     
 
    0.623
ENSCING00000021895
Uncharacterized protein (286 aa)
     
  0.623
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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