STRINGSTRING
LOC778981 protein (Ciona intestinalis) - STRING interaction network
"LOC778981" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC778981Transcription factor protein (263 aa)    
Predicted Functional Partners:
supt16h
Uncharacterized protein (1035 aa)
     
  0.897
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.829
ENSCING00000017347
Uncharacterized protein (392 aa)
         
  0.793
ENSCING00000002136
Uncharacterized protein (235 aa)
         
  0.788
ENSCING00000024450
Uncharacterized protein (236 aa)
         
  0.788
gabpalpha
GA repeat binding protein alpha homolog (364 aa)
     
  0.709
ENSCING00000003901
Uncharacterized protein (384 aa)
     
  0.704
ENSCING00000023482
Uncharacterized protein (607 aa)
     
 
  0.702
ENSCING00000009202
Uncharacterized protein (489 aa)
     
 
  0.676
ssrp1
FACT complex subunit SSRP1 ; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (603 aa)
     
0.656
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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