STRINGSTRING
wdr48 protein (Ciona intestinalis) - STRING interaction network
"wdr48" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr48Uncharacterized protein (687 aa)    
Predicted Functional Partners:
ENSCING00000014345
Ubiquitin carboxyl-terminal hydrolase (423 aa)
     
  0.995
ENSCING00000022457
Uncharacterized protein (366 aa)
     
  0.987
ENSCING00000024544
Uncharacterized protein (328 aa)
     
  0.892
ENSCING00000019870
Uncharacterized protein (366 aa)
     
 
  0.818
r27a
R27a protein (155 aa)
     
      0.670
ENSCING00000004772
Uncharacterized protein (594 aa)
     
        0.626
ENSCING00000010888
Uncharacterized protein (635 aa)
     
 
  0.618
ENSCING00000006215
Uncharacterized protein (1922 aa)
     
        0.618
ENSCING00000022911
Uncharacterized protein (1218 aa)
     
  0.600
ENSCING00000009065
Uncharacterized protein (1264 aa)
     
 
  0.593
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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