STRINGSTRING
gataa protein (Ciona intestinalis) - STRING interaction network
"gataa" - GATAa protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gataaGATAa protein (641 aa)    
Predicted Functional Partners:
macho1
Zic related zinc finger protein Ci-macho1 (501 aa)
       
  0.753
zicl
Zic-like protein Ci-ZicL (390 aa)
       
  0.752
ENSCING00000008254
Zinc finger protein ZF(C2H2)-129 (687 aa)
       
  0.751
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.714
mef2
Transcription factor protein (439 aa)
     
  0.706
ENSCING00000023054
Uncharacterized protein (181 aa)
       
  0.672
ENSCING00000020664
Uncharacterized protein; Zinc finger protein (251 aa)
       
  0.672
zf(c2h2)-8
Zinc finger protein (300 aa)
       
  0.672
ENSCING00000020966
Uncharacterized protein (227 aa)
       
  0.672
ENSCING00000022017
Zinc finger protein (302 aa)
       
  0.672
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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