STRINGSTRING
psmd6 protein (Ciona intestinalis) - STRING interaction network
"psmd6" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psmd6Uncharacterized protein (386 aa)    
Predicted Functional Partners:
psmc6
Uncharacterized protein (393 aa)
     
  0.999
ENSCING00000005232
Uncharacterized protein (458 aa)
     
  0.999
ENSCING00000006038
Uncharacterized protein (398 aa)
     
  0.999
ENSCING00000005748
Uncharacterized protein (433 aa)
     
  0.999
ENSCING00000003550
Uncharacterized protein (463 aa)
     
  0.999
ENSCING00000018514
Proteasome subunit beta type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (239 aa)
     
  0.999
ENSCING00000006810
Uncharacterized protein (376 aa)
     
  0.999
ENSCING00000003479
Uncharacterized protein (428 aa)
     
  0.998
ENSCING00000009508
Uncharacterized protein (420 aa)
     
  0.998
ENSCING00000003873
Uncharacterized protein (419 aa)
     
  0.998
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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