STRINGSTRING
ftzf protein (Ciona intestinalis) - STRING interaction network
"ftzf" - Nuclear receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftzfNuclear receptor (504 aa)    
Predicted Functional Partners:
fxr
Nuclear receptor (294 aa)
     
 
  0.684
tcf/lef
Transcription factor protein (351 aa)
       
      0.661
tr2/4
Nuclear receptor (692 aa)
       
 
0.594
gcnf
Nuclear receptor (694 aa)
       
 
0.591
vdr-b
Nuclear receptor VDR-b (128 aa)
       
 
  0.582
lxr
Uncharacterized protein (557 aa)
       
 
0.560
nr1
Nuclear receptor 1 (587 aa)
       
 
0.555
ppar
Nuclear receptor (644 aa)
       
 
0.555
rar
Nuclear receptor (638 aa)
       
 
0.555
vdr-a
Nuclear receptor (532 aa)
       
 
0.555
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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