STRINGSTRING
mitf protein (Ciona intestinalis) - STRING interaction network
"mitf" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mitfTranscription factor protein (484 aa)    
Predicted Functional Partners:
ENSCING00000007020
Uncharacterized protein (273 aa)
       
  0.559
CTNNB1
Beta-catenin (497 aa)
       
  0.559
ENSCING00000017967
Uncharacterized protein (163 aa)
       
    0.551
pias
Protein inhibitor of activated STAT (687 aa)
       
    0.551
erk1/2
Mitogen-activated protein kinase (350 aa)
       
  0.527
soxE
SoxE protein; Uncharacterized protein (808 aa)
       
 
  0.505
pax3/7
Uncharacterized protein (673 aa)
       
 
  0.498
ENSCING00000004277
Uncharacterized protein (469 aa)
     
   
  0.464
LOC778715
Transcription factor protein (1039 aa)
       
 
  0.461
pax6
Homeobox transcription factor Pax6 (497 aa)
       
 
  0.451
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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