STRINGSTRING
ikbkap protein (Ciona intestinalis) - STRING interaction network
"ikbkap" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ikbkapUncharacterized protein ; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (1284 aa)    
Predicted Functional Partners:
ENSCING00000005659
Uncharacterized protein (550 aa)
     
  0.991
ENSCING00000009103
Uncharacterized protein (762 aa)
     
  0.986
ENSCING00000007918
Uncharacterized protein (353 aa)
     
  0.986
ENSCING00000013996
Uncharacterized protein (582 aa)
     
      0.784
ENSCING00000015963
Uncharacterized protein (274 aa)
     
  0.755
ENSCING00000009639
Uncharacterized protein (603 aa)
     
   
  0.641
nfya
Uncharacterized protein (383 aa)
       
      0.582
supt5h
Uncharacterized protein (1047 aa)
     
  0.576
ENSCING00000019533
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (225 aa)
     
      0.548
ENSCING00000025128
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (207 aa)
     
      0.548
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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