STRINGSTRING
LOC494406 protein (Ciona intestinalis) - STRING interaction network
"LOC494406" - Caspr5 protein isoform 1-like precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC494406Caspr5 protein isoform 1-like precursor (308 aa)    
Predicted Functional Partners:
ENSCING00000013107
Uncharacterized protein (353 aa)
     
  0.541
ENSCING00000013105
Uncharacterized protein (326 aa)
     
  0.541
ENSCING00000007077
Uncharacterized protein (1152 aa)
     
  0.541
ENSCING00000001753
Uncharacterized protein (856 aa)
     
 
  0.413
ENSCING00000024214
Uncharacterized protein (218 aa)
     
 
  0.403
ENSCING00000003646
Uncharacterized protein (281 aa)
     
 
  0.403
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (13%) [HD]