STRINGSTRING
hoxa2 protein (Ciona intestinalis) - STRING interaction network
"hoxa2" - Gsx in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxa2Gsx (349 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
  0.930
ENSCING00000003118
Uncharacterized protein (278 aa)
       
 
  0.677
meis
Transcription factor protein (554 aa)
       
  0.521
LOC778715
Transcription factor protein (1039 aa)
       
  0.514
ENSCING00000008254
Zinc finger protein ZF(C2H2)-129 (687 aa)
       
  0.474
dbx
Uncharacterized protein (197 aa)
     
   
  0.467
gli
Transcription factor protein (1098 aa)
       
  0.467
pax6
Homeobox transcription factor Pax6 (497 aa)
     
0.465
foxc
Transcription factor protein (510 aa)
       
  0.442
pax3/7
Uncharacterized protein (673 aa)
     
0.406
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (13%) [HD]