STRINGSTRING
pitx protein (Ciona intestinalis) - STRING interaction network
"pitx" - Paired superclass homeobox transcription factor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitxPaired superclass homeobox transcription factor (468 aa)    
Predicted Functional Partners:
ENSCING00000018880
Uncharacterized protein (501 aa)
       
 
  0.618
ENSCING00000014884
Uncharacterized protein (311 aa)
       
 
  0.618
lhx3
LIM/homeobox protein Lhx3a type 1 (596 aa)
     
   
  0.599
ENSCING00000007699
Uncharacterized protein (983 aa)
           
  0.582
vgat
Vesicular GABA transporter (637 aa)
           
  0.561
ENSCING00000004106
Uncharacterized protein (492 aa)
           
  0.459
csd
Cysteine sulfinic acid decarboxylase (488 aa)
           
  0.459
gad
Glutamate decarboxylase 1 (531 aa)
           
  0.459
lmx-like
Transcription factor protein (505 aa)
     
 
  0.451
lmx
Transcription factor protein (625 aa)
     
 
  0.451
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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