STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7B684_CIOINAMP-binding domain-containing protein. (656 aa)    
Predicted Functional Partners:
F6YHN3_CIOIN
Uncharacterized protein.
    
 0.742
LOC100181654
PHTB1_N domain-containing protein.
   
 0.742
F6ZZ65_CIOIN
Uncharacterized protein.
   
 0.740
F6WBK6_CIOIN
TPR_REGION domain-containing protein.
    
 0.720
F6Y677_CIOIN
Uncharacterized protein.
    
 0.691
F6XIK7_CIOIN
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
      
 0.581
F7A5Y1_CIOIN
Uncharacterized protein.
   
 
 0.548
H2XNC3_CIOIN
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.516
LOC100182700
SAP domain-containing protein.
      
 0.504
LOC100181439
Leucine zipper transcription factor-like protein 1.
   
 0.496
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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