STRINGSTRING
creb/atf-a protein (Ciona intestinalis) - STRING interaction network
"creb/atf-a" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
creb/atf-aTranscription factor protein (649 aa)    
Predicted Functional Partners:
creb/atf-b
Transcription factor protein (542 aa)
       
0.852
creb/atf-c
Transcription factor Ci-CREB/ATF-c (298 aa)
       
  0.833
ENSCING00000007631
Uncharacterized protein (525 aa)
         
  0.468
atf4/5
Transcription factor protein (340 aa)
       
 
  0.447
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (16%) [HD]