STRINGSTRING
mnx protein (Ciona intestinalis) - STRING interaction network
"mnx" - Transcription factor HB9 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnxTranscription factor HB9 (409 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
  0.901
ENSCING00000003118
Uncharacterized protein (278 aa)
       
 
  0.677
ENSCING00000006677
Uncharacterized protein (377 aa)
       
 
  0.573
LOC778715
Transcription factor protein (1039 aa)
       
  0.514
ENSCING00000005248
Uncharacterized protein (731 aa)
           
  0.453
isl
LIM homeodomain protein (402 aa)
       
 
  0.404
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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