STRINGSTRING
hand protein (Ciona intestinalis) - STRING interaction network
"hand" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
handTranscription factor protein (378 aa)    
Predicted Functional Partners:
e12/e47
Transcription factor protein (641 aa)
       
 
  0.784
LOC778699
Uncharacterized protein (287 aa)
       
  0.579
mef2
Transcription factor protein (439 aa)
       
  0.561
nk4
Transcription factor protein (623 aa)
       
  0.504
titf1
Homeobox transcription factor TTF1 (477 aa)
       
  0.484
LOC778715
Transcription factor protein (1039 aa)
       
 
  0.401
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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