STRINGSTRING
six36 protein (Ciona intestinalis) - STRING interaction network
"six36" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
six36Uncharacterized protein (403 aa)    
Predicted Functional Partners:
pax6
Homeobox transcription factor Pax6 (497 aa)
     
 
  0.800
ENSCING00000008588
Uncharacterized protein (434 aa)
     
 
  0.754
pax3/7
Uncharacterized protein (673 aa)
     
 
  0.719
ENSCING00000013561
Transcription factor protein (301 aa)
     
 
  0.512
nkx-a
Uncharacterized protein (291 aa)
     
 
  0.512
ENSCING00000019659
Uncharacterized protein (414 aa)
       
 
  0.496
groucho2
Groucho (835 aa)
       
 
  0.468
groucho1
Groucho (847 aa)
       
 
  0.468
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
 
  0.455
prx1
Prx1 protein (825 aa)
     
   
  0.452
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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