STRINGSTRING
r27a protein (Ciona intestinalis) - STRING interaction network
"r27a" - R27a protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
r27aR27a protein (155 aa)    
Predicted Functional Partners:
ENSCING00000011947
40S ribosomal protein S12 (138 aa)
   
  0.999
ENSCING00000005414
Uncharacterized protein (133 aa)
   
  0.999
Cin.18922
40S ribosomal protein S6 (248 aa)
   
  0.999
ENSCING00000020211
Uncharacterized protein (148 aa)
     
  0.999
ENSCING00000005199
Uncharacterized protein (266 aa)
   
  0.999
ENSCING00000002448
Uncharacterized protein (204 aa)
     
  0.999
ENSCING00000011628
Uncharacterized protein (119 aa)
     
  0.999
ENSCING00000005003
Uncharacterized protein (263 aa)
     
  0.999
ENSCING00000022358
Uncharacterized protein ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (303 aa)
     
  0.999
ENSCING00000016900
Uncharacterized protein (148 aa)
     
  0.999
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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