STRINGSTRING
pck1 protein (Ciona intestinalis) - STRING interaction network
"pck1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pck1Uncharacterized protein (641 aa)    
Predicted Functional Partners:
ENSCING00000020754
Malate dehydrogenase (334 aa)
     
  0.972
pc
Pyruvate carboxylase ; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second (1186 aa)
     
 
  0.943
ENSCING00000008796
Uncharacterized protein (345 aa)
     
  0.934
ENSCING00000007313
Uncharacterized protein (440 aa)
         
  0.932
pkm
Pyruvate kinase (534 aa)
         
  0.911
ENSCING00000024567
Uncharacterized protein (105 aa)
         
  0.902
Cin.23890
Uncharacterized protein (483 aa)
         
  0.818
ENSCING00000010459
Uncharacterized protein ; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (385 aa)
         
  0.816
ENSCING00000009647
Glutamate dehydrogenase (443 aa)
       
  0.814
ENSCING00000007260
Glutamate dehydrogenase (505 aa)
       
  0.814
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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