STRINGSTRING
irx-c protein (Ciona intestinalis) - STRING interaction network
"irx-c" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx-cTranscription factor protein (697 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
0.789
ENSCING00000022660
Uncharacterized protein (298 aa)
     
 
  0.522
LOC778622
Fringe (381 aa)
     
 
  0.522
coup
Nuclear receptor (416 aa)
       
  0.515
ENSCING00000008022
Uncharacterized protein (1310 aa)
     
  0.481
LOC778715
Transcription factor protein (1039 aa)
     
 
  0.446
ENSCING00000015298
Uncharacterized protein (362 aa)
       
  0.435
Cin.52569
Histone deacetylase (404 aa)
       
  0.435
ENSCING00000002360
Histone deacetylase (430 aa)
       
  0.435
smad2/3a
Smad2/3a protein (446 aa)
     
  0.427
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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