STRINGSTRING
pax6 protein (Ciona intestinalis) - STRING interaction network
"pax6" - Homeobox transcription factor Pax6 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax6Homeobox transcription factor Pax6 (497 aa)    
Predicted Functional Partners:
ENSCING00000014835
E3 ubiquitin-protein ligase (910 aa)
       
      0.874
ENSCING00000014739
Uncharacterized protein (181 aa)
       
      0.874
ENSCING00000009395
Uncharacterized protein (268 aa)
       
      0.874
ENSCING00000009208
Uncharacterized protein (1067 aa)
       
      0.829
atrx
Uncharacterized protein (1087 aa)
       
      0.829
six36
Uncharacterized protein (403 aa)
     
 
  0.800
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
 
  0.750
gli
Transcription factor protein (1098 aa)
       
  0.726
bra
Transcription factor protein (439 aa)
     
 
  0.710
six12
Transcription factor protein (238 aa)
     
 
  0.689
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (8%) [HD]