STRINGSTRING
Cin.21688 protein (Ciona intestinalis) - STRING interaction network
"Cin.21688" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cin.21688Uncharacterized protein (251 aa)    
Predicted Functional Partners:
ENSCING00000003537
Uncharacterized protein (824 aa)
     
  0.995
ENSCING00000021020
Uncharacterized protein (234 aa)
     
  0.967
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
     
   
  0.852
ect2
Uncharacterized protein (782 aa)
     
  0.844
ENSCING00000009574
Uncharacterized protein (754 aa)
       
      0.830
rcl1
Rac and Cdc42-like 1 protein (194 aa)
     
  0.809
LOC445702
Rac1 protein (192 aa)
     
  0.809
ENSCING00000015739
Uncharacterized protein (333 aa)
     
 
  0.807
rhoa
RhoA protein (193 aa)
       
  0.804
ENSCING00000025012
Uncharacterized protein (431 aa)
     
   
  0.800
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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