STRINGSTRING
zf(ubp)-3 protein (Ciona intestinalis) - STRING interaction network
"zf(ubp)-3" - Zinc finger protein 3 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zf(ubp)-3Zinc finger protein 3 (993 aa)    
Predicted Functional Partners:
ENSCING00000000395
Uncharacterized protein ; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription (256 aa)
     
  0.979
ENSCING00000012953
Uncharacterized protein (293 aa)
     
  0.979
ENSCING00000015310
Uncharacterized protein (316 aa)
       
  0.941
kat2b
Uncharacterized protein (365 aa)
     
  0.916
ENSCING00000018197
Uncharacterized protein (495 aa)
     
  0.916
kat2a
Uncharacterized protein (709 aa)
     
  0.916
ENSCING00000008712
Uncharacterized protein (423 aa)
     
  0.890
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.888
ENSCING00000001931
Uncharacterized protein (409 aa)
     
  0.882
ENSCING00000001459
Uncharacterized protein (451 aa)
     
  0.882
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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