STRINGSTRING
hox4 protein (Ciona intestinalis) - STRING interaction network
"hox4" - Hox4 protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hox4Hox4 protein (335 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
  0.932
ENSCING00000003118
Uncharacterized protein (278 aa)
       
 
  0.677
foxc
Transcription factor protein (510 aa)
       
  0.526
irx-b
Transcription factor protein (570 aa)
       
  0.522
irx-a
Transcription factor protein (567 aa)
       
  0.518
LOC778715
Transcription factor protein (1039 aa)
       
  0.514
klf2
Zinc finger protein (610 aa)
       
  0.472
cbp
Uncharacterized protein (1533 aa)
       
    0.470
hox1
Homeobox transcription factor Hox1 (365 aa)
     
 
0.443
foxp
Transcription factor protein (745 aa)
       
  0.429
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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