STRINGSTRING
fcol1 protein (Ciona intestinalis) - STRING interaction network
"fcol1" - Fibrillar collagen precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fcol1Fibrillar collagen precursor (844 aa)    
Predicted Functional Partners:
ENSCING00000022662
Uncharacterized protein (550 aa)
     
  0.771
Cin.27802
Uncharacterized protein (1161 aa)
     
  0.768
ENSCING00000011322
Uncharacterized protein (724 aa)
   
0.670
ENSCING00000000498
Uncharacterized protein (384 aa)
     
 
  0.667
ENSCING00000002059
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (203 aa)
     
 
  0.614
ENSCING00000001528
Uncharacterized protein (1454 aa)
     
0.606
ENSCING00000008749
Uncharacterized protein (446 aa)
     
  0.605
fras1
Uncharacterized protein (3955 aa)
       
  0.599
tolloid
Tolloid protein (853 aa)
       
  0.588
ENSCING00000005940
Uncharacterized protein (435 aa)
     
  0.585
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (9%) [HD]