STRINGSTRING
LOC778713 protein (Ciona intestinalis) - STRING interaction network
"LOC778713" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC778713Transcription factor protein (584 aa)    
Predicted Functional Partners:
ENSCING00000021169
Uncharacterized protein (223 aa)
       
  0.511
Cin.32434
Uncharacterized protein (236 aa)
       
  0.511
rps6ka5
Uncharacterized protein (813 aa)
       
  0.511
ENSCING00000014665
Uncharacterized protein (143 aa)
       
  0.511
ENSCING00000009071
Uncharacterized protein (943 aa)
       
  0.511
ENSCING00000008839
Uncharacterized protein (312 aa)
       
  0.511
prkca
Protein kinase C (657 aa)
       
  0.511
ENSCING00000008200
Uncharacterized protein (162 aa)
       
  0.511
ENSCING00000008043
Uncharacterized protein (512 aa)
       
  0.511
ENSCING00000006077
Uncharacterized protein (346 aa)
       
  0.511
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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