STRINGSTRING
myod protein (Ciona intestinalis) - STRING interaction network
"myod" - MyoD-family protein j in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myodMyoD-family protein j (590 aa)    
Predicted Functional Partners:
e12/e47
Transcription factor protein (641 aa)
       
  0.929
mef2
Transcription factor protein (439 aa)
       
  0.852
erk5
Mitogen-activated protein kinase (820 aa)
       
  0.622
srf
Transcription factor protein (335 aa)
       
  0.610
pax3/7
Uncharacterized protein (673 aa)
       
 
  0.598
pax6
Homeobox transcription factor Pax6 (497 aa)
       
 
  0.596
erk1/2
Mitogen-activated protein kinase (350 aa)
       
  0.573
erk3/4
Mitogen-activated protein kinase (906 aa)
       
  0.555
fgf9/16/20
Fibroblast growth factor 9/16/20 (297 aa)
           
  0.516
fgf4/5/6
Fibroblast growth factor 4/5/6 (229 aa)
           
  0.501
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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