STRINGSTRING
Cin.31589 protein (Ciona intestinalis) - STRING interaction network
"Cin.31589" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cin.31589Uncharacterized protein (222 aa)    
Predicted Functional Partners:
ENSCING00000006401
Uncharacterized protein (724 aa)
     
  0.937
clp1
Uncharacterized protein ; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (430 aa)
       
  0.924
cpsf2
Uncharacterized protein (784 aa)
     
  0.885
ENSCING00000021080
Uncharacterized protein (262 aa)
     
  0.859
ENSCING00000003483
Uncharacterized protein (511 aa)
     
  0.857
ENSCING00000007364
Uncharacterized protein (1190 aa)
 
 
 
  0.854
ENSCING00000018240
Uncharacterized protein (239 aa)
       
  0.812
cpsf3
Uncharacterized protein (695 aa)
     
  0.797
cstf1
Uncharacterized protein (435 aa)
         
  0.795
ENSCING00000020318
Ziinc finger protein Ci-ZF(C3H)-7 (977 aa)
     
  0.793
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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