STRINGSTRING
cdx protein (Ciona intestinalis) - STRING interaction network
"cdx" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdxTranscription factor protein (394 aa)    
Predicted Functional Partners:
ENSCING00000024240
Uncharacterized protein (596 aa)
       
      0.868
Cin.22277
Proteasome subunit alpha type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (242 aa)
       
      0.868
ENSCING00000008756
Proteasome subunit alpha type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (253 aa)
       
      0.868
ENSCING00000006425
Uncharacterized protein (370 aa)
       
      0.868
ENSCING00000003873
Uncharacterized protein (419 aa)
       
      0.868
ENSCING00000003598
Uncharacterized protein (901 aa)
       
      0.868
ENSCING00000003550
Uncharacterized protein (463 aa)
       
      0.868
fgf8/17/18
Fibroblast growth factor 8/17/18 (414 aa)
       
 
  0.658
fgf9/16/20
Fibroblast growth factor 9/16/20 (297 aa)
       
 
  0.647
7
Fibroblast growth factor 3/7/10/22 (268 aa)
       
 
  0.582
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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