STRINGSTRING
ddb1 protein (Ciona intestinalis) - STRING interaction network
"ddb1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddb1Uncharacterized protein (1145 aa)    
Predicted Functional Partners:
cul4a
Uncharacterized protein (614 aa)
     
  0.989
ENSCING00000002955
Uncharacterized protein (707 aa)
     
  0.987
ckn1
Cockayne syndrome 1 homolog (403 aa)
       
  0.982
ENSCING00000004842
Uncharacterized protein (435 aa)
       
  0.956
ENSCING00000022721
Uncharacterized protein (104 aa)
       
  0.952
ENSCING00000018578
Uncharacterized protein (119 aa)
       
 
  0.938
ENSCING00000001372
Uncharacterized protein (100 aa)
       
  0.933
Cin.50097
Uncharacterized protein (255 aa)
       
    0.928
ENSCING00000007463
Uncharacterized protein (1416 aa)
     
 
  0.923
ENSCING00000023849
Uncharacterized protein (145 aa)
     
  0.890
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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