STRINGSTRING
ENSCING00000007617 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000007617" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000007617Uncharacterized protein (400 aa)    
Predicted Functional Partners:
ENSCING00000001847
Uncharacterized protein (560 aa)
     
  0.967
ENSCING00000022952
Uncharacterized protein (281 aa)
     
 
  0.967
ENSCING00000021708
Uncharacterized protein (188 aa)
     
 
  0.963
ENSCING00000007599
Uncharacterized protein (233 aa)
     
 
  0.574
U1C
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (122 aa)
           
  0.487
ENSCING00000024695
Zinc finger protein Ci-ZF(C3H/U1like)-1 (162 aa)
           
  0.487
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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