STRINGSTRING
erd2 protein (Ciona intestinalis) - STRING interaction network
"erd2" - KDEL receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erd2KDEL receptor (212 aa)    
Predicted Functional Partners:
ENSCING00000023348
Uncharacterized protein (205 aa)
     
  0.810
ENSCING00000020806
Uncharacterized protein (183 aa)
     
  0.783
ENSCING00000021790
Uncharacterized protein (182 aa)
     
  0.783
ENSCING00000004846
Uncharacterized protein (180 aa)
     
  0.783
ENSCING00000002213
Coatomer subunit beta ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (965 aa)
     
  0.779
ENSCING00000004501
Uncharacterized protein (291 aa)
     
 
  0.765
ENSCING00000014527
Uncharacterized protein (177 aa)
     
 
  0.762
ENSCING00000008874
Uncharacterized protein (510 aa)
     
 
  0.760
ENSCING00000008299
Uncharacterized protein (203 aa)
     
  0.758
ENSCING00000010411
Uncharacterized protein (310 aa)
     
  0.747
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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