STRINGSTRING
perlecan protein (Ciona intestinalis) - STRING interaction network
"perlecan" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
perlecanUncharacterized protein (502 aa)    
Predicted Functional Partners:
Cin.27802
Uncharacterized protein (1161 aa)
     
  0.693
ENSCING00000021704
Uncharacterized protein (490 aa)
       
 
  0.673
ENSCING00000020353
Uncharacterized protein (402 aa)
     
  0.667
ENSCING00000022078
Uncharacterized protein (1201 aa)
     
  0.667
ENSCING00000007177
Uncharacterized protein (1597 aa)
     
  0.628
ush2a
Uncharacterized protein (5108 aa)
     
  0.628
uglcat1
Beta-1,3-glucuronosyltransferase (340 aa)
         
  0.614
fras1
Uncharacterized protein (3955 aa)
     
 
  0.575
ENSCING00000018512
Syndecan ; Cell surface proteoglycan (210 aa)
     
 
  0.483
ENSCING00000019553
Uncharacterized protein (310 aa)
     
 
  0.473
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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