STRINGSTRING
if-c protein (Ciona intestinalis) - STRING interaction network
"if-c" - Intermediate filament protein IF-C in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
if-cIntermediate filament protein IF-C (438 aa)    
Predicted Functional Partners:
ENSCING00000004078
Uncharacterized protein (293 aa)
     
        0.504
ENSCING00000002306
Uncharacterized protein (1527 aa)
     
        0.504
ENSCING00000001033
Uncharacterized protein (699 aa)
     
 
  0.457
ENSCING00000018903
Uncharacterized protein (383 aa)
     
        0.402
ENSCING00000021884
Uncharacterized protein (88 aa)
     
        0.402
ENSCING00000006718
Uncharacterized protein (220 aa)
     
        0.402
ENSCING00000002598
Uncharacterized protein (371 aa)
     
        0.402
ENSCING00000002204
Uncharacterized protein (258 aa)
     
        0.402
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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