STRINGSTRING
pbx protein (Ciona intestinalis) - STRING interaction network
"pbx" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbxTranscription factor protein (446 aa)    
Predicted Functional Partners:
meis
Transcription factor protein (554 aa)
       
0.967
hox2
Transcription factor protein; Uncharacterized protein (114 aa)
       
  0.941
hox1
Homeobox transcription factor Hox1 (365 aa)
       
  0.935
hox4
Hox4 protein (335 aa)
       
  0.932
hoxa2
Gsx (349 aa)
       
  0.930
hox3
Homeoprotein 3 (733 aa)
       
  0.928
hox5
Hox 5 (220 aa)
       
  0.925
ENSCING00000023524
Uncharacterized protein (79 aa)
       
  0.922
mox
Transcription factor protein (176 aa)
       
  0.901
mnx
Transcription factor HB9 (409 aa)
       
  0.901
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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