STRINGSTRING
msxb protein (Ciona intestinalis) - STRING interaction network
"msxb" - Msxb homeoprotein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msxbMsxb homeoprotein (327 aa)    
Predicted Functional Partners:
lhx2/9
Uncharacterized protein (171 aa)
     
 
  0.649
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
     
   
  0.611
ENSCING00000003777
Transforming growth factor beta superfamily signaling ligand (660 aa)
           
  0.523
bra
Transcription factor protein (439 aa)
       
 
  0.515
snail
Transcription factor protein (584 aa)
           
  0.509
otx2
Otx (425 aa)
           
  0.506
pax1/9
Homeobox transcription factor Pax1/9 (457 aa)
       
 
  0.506
wnt7
Protein Wnt ; Ligand for members of the frizzled family of seven transmembrane receptors (369 aa)
           
  0.461
wnt3
Wingless-type MMTV integration site family, member 3 ; Ligand for members of the frizzled family of seven transmembrane receptors (304 aa)
           
  0.461
LOC778720
Wnt signaling ligand ; Ligand for members of the frizzled family of seven transmembrane receptors (510 aa)
           
  0.461
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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