STRINGSTRING
ckn1 protein (Ciona intestinalis) - STRING interaction network
"ckn1" - Cockayne syndrome 1 homolog in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ckn1Cockayne syndrome 1 homolog (403 aa)    
Predicted Functional Partners:
ddb1
Uncharacterized protein (1145 aa)
       
  0.982
ENSCING00000006436
Uncharacterized protein (345 aa)
       
  0.822
ENSCING00000006174
Zinc finger protein (645 aa)
     
 
0.804
ENSCING00000018569
Uncharacterized protein (870 aa)
     
  0.802
ENSCING00000022852
Uncharacterized protein (568 aa)
         
    0.800
ENSCING00000006985
Uncharacterized protein (852 aa)
       
  0.779
ENSCING00000000752
Zinc finger protein (395 aa)
       
  0.765
ercc3
Excision repair cross-complementing rodent repair deficiency, complementation group 3 (794 aa)
     
 
  0.761
ENSCING00000022981
Uncharacterized protein (917 aa)
     
 
  0.760
btaf1
Uncharacterized protein (1355 aa)
     
  0.757
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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