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bco protein (Ciona intestinalis) - STRING interaction network
"bco" - Beta-carotene-15,15'-monooxygenase in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcoBeta-carotene-15,15’-monooxygenase (524 aa)    
Predicted Functional Partners:
ENSCING00000023602
Uncharacterized protein (259 aa)
         
  0.909
ENSCING00000001171
Uncharacterized protein (304 aa)
         
  0.908
adh3
Alcohol dehydrogenase class 3 (377 aa)
         
  0.902
ENSCING00000006897
Uncharacterized protein (204 aa)
         
    0.900
Cin.45396
Uncharacterized protein (226 aa)
         
    0.900
ci-prd-a
Transcription factor protein; Uncharacterized protein (121 aa)
           
  0.463
ENSCING00000008248
Uncharacterized protein (549 aa)
     
   
  0.436
ENSCING00000006216
Uncharacterized protein (547 aa)
     
   
  0.424
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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