STRINGSTRING
nr-like protein (Ciona intestinalis) - STRING interaction network
"nr-like" - Nuclear receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr-likeNuclear receptor (657 aa)    
Predicted Functional Partners:
ENSCING00000003598
Uncharacterized protein (901 aa)
       
      0.805
ENSCING00000003550
Uncharacterized protein (463 aa)
       
      0.805
ENSCING00000021447
Uncharacterized protein (160 aa)
       
  0.462
ENSCING00000018867
Uncharacterized protein (227 aa)
       
  0.462
vdr-b
Nuclear receptor VDR-b (128 aa)
       
  0.433
fxr
Nuclear receptor (294 aa)
       
  0.433
rps6ka5
Uncharacterized protein (813 aa)
       
  0.413
ENSCING00000014665
Uncharacterized protein (143 aa)
       
  0.413
ENSCING00000008043
Uncharacterized protein (512 aa)
       
  0.413
ENSCING00000006077
Uncharacterized protein (346 aa)
       
  0.413
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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