STRINGSTRING
ephrina-b protein (Ciona intestinalis) - STRING interaction network
"ephrina-b" - Ephrin precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ephrina-bEphrin precursor (265 aa)    
Predicted Functional Partners:
ephg
Uncharacterized protein (988 aa)
     
  0.975
ephd
Ephrin receptor delta (1048 aa)
     
  0.974
ephe
Ephrin receptor epsilon precursor (1006 aa)
     
  0.970
eph3
Ephrin receptor precursor (1002 aa)
     
  0.958
ENSCING00000011899
Uncharacterized protein (992 aa)
     
  0.940
eph-like
Ephrin receptor like protein precursor (1085 aa)
     
  0.940
atp13a3
Uncharacterized protein (1125 aa)
     
        0.670
ENSCING00000018289
Uncharacterized protein (1694 aa)
         
  0.647
ENSCING00000023222
Uncharacterized protein (111 aa)
     
  0.621
ENSCING00000021827
Uncharacterized protein (412 aa)
     
  0.621
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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