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zf(c3h)-5 protein (Ciona intestinalis) - STRING interaction network
"zf(c3h)-5" - Zinc finger protein ZF(C3H)-5 in Ciona intestinalis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zf(c3h)-5Zinc finger protein ZF(C3H)-5 (609 aa)    
Predicted Functional Partners:
ENSCING00000007544
Uncharacterized protein (1596 aa)
   
  0.698
ENSCING00000002850
Uncharacterized protein (2241 aa)
   
        0.655
ENSCING00000007699
Uncharacterized protein (983 aa)
   
        0.654
gmps
Uncharacterized protein (688 aa)
   
   
  0.582
ENSCING00000014677
Uncharacterized protein (324 aa)
       
 
  0.537
ENSCING00000006069
Uncharacterized protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (786 aa)
     
   
  0.536
ENSCING00000003466
Uncharacterized protein (528 aa)
           
  0.520
ENSCING00000020062
Uncharacterized protein ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (264 aa)
   
 
  0.505
ENSCING00000019124
Uncharacterized protein ; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position (344 aa)
   
   
  0.491
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
   
   
  0.486
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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