STRINGSTRING
ubf protein (Ciona intestinalis) - STRING interaction network
"ubf" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubfTranscription factor protein (789 aa)    
Predicted Functional Partners:
supt16h
Uncharacterized protein (1035 aa)
     
  0.897
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.831
ssrp1
FACT complex subunit SSRP1 ; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (603 aa)
     
  0.807
ENSCING00000012588
Uncharacterized protein (588 aa)
     
  0.744
Cin.26664
Uncharacterized protein (316 aa)
     
  0.730
rbbp4
Uncharacterized protein (431 aa)
     
  0.699
Cin.52569
Histone deacetylase (404 aa)
     
  0.693
ENSCING00000009202
Uncharacterized protein (489 aa)
     
 
  0.672
ENSCING00000007700
Uncharacterized protein (1701 aa)
     
  0.667
ENSCING00000018569
Uncharacterized protein (870 aa)
     
    0.663
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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