STRINGSTRING
gabpalpha protein (Ciona intestinalis) - STRING interaction network
"gabpalpha" - GA repeat binding protein alpha homolog in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpalphaGA repeat binding protein alpha homolog (364 aa)    
Predicted Functional Partners:
ENSCING00000021010
Uncharacterized protein (374 aa)
     
  0.959
LOC778981
Transcription factor protein (263 aa)
     
  0.709
ENSCING00000002253
Uncharacterized protein (432 aa)
       
 
  0.690
ENSCING00000017347
Uncharacterized protein (392 aa)
     
 
  0.640
ENSCING00000003901
Uncharacterized protein (384 aa)
     
 
  0.613
erk1/2
Mitogen-activated protein kinase (350 aa)
     
  0.607
erk5
Mitogen-activated protein kinase (820 aa)
     
  0.607
ENSCING00000001478
Uncharacterized protein (364 aa)
       
  0.606
erk3/4
Mitogen-activated protein kinase (906 aa)
       
  0.606
srf
Transcription factor protein (335 aa)
     
  0.579
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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