STRINGSTRING
ptfa protein (Ciona intestinalis) - STRING interaction network
"ptfa" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptfaUncharacterized protein (66 aa)    
Predicted Functional Partners:
e12/e47
Transcription factor protein (641 aa)
       
 
  0.846
su(h)
Suppressor of hairless homolog ; Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes (By similarity). Required for the transcriptional expression of Brachyury, suggesting that it participates in notochord differentiation (554 aa)
       
 
  0.512
ENSCING00000004186
Uncharacterized protein (475 aa)
       
 
  0.505
ipf1
Transcription factor (411 aa)
     
 
  0.494
ENSCING00000005021
Transcription factor protein (333 aa)
       
  0.459
ENSCING00000003929
Transcription factor protein (522 aa)
       
  0.459
LOC778715
Transcription factor protein (1039 aa)
       
 
  0.401
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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