STRINGSTRING
rhob protein (Ciona intestinalis) - STRING interaction network
"rhob" - Rif protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhobRif protein (249 aa)    
Predicted Functional Partners:
ENSCING00000018289
Uncharacterized protein (1694 aa)
       
  0.923
ENSCING00000020161
Uncharacterized protein (699 aa)
     
  0.910
ENSCING00000007043
Uncharacterized protein (619 aa)
     
  0.910
ENSCING00000022708
Uncharacterized protein (131 aa)
     
  0.904
ENSCING00000014936
Uncharacterized protein (93 aa)
     
  0.904
ENSCING00000003983
Uncharacterized protein (372 aa)
       
  0.865
ci-tlr2
Toll-like receptor 2 (947 aa)
     
  0.852
ENSCING00000009569
Uncharacterized protein (1202 aa)
       
  0.839
ENSCING00000021169
Uncharacterized protein (223 aa)
       
  0.835
Cin.32434
Uncharacterized protein (236 aa)
       
  0.835
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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